In Japan, a FLCL Progressive and Alternative Blu-ray box set was released on October 31, 2018. The 3-disc set featured both seasons, cut as two full length movies as they were shown in Japanese Theaters, and a host of special features.
FLCL: Progressive (Japanese Audio)
- Episode 201: RE: Start
- Episode 202: Freebie Honey
- Episode 203: Stone Skipping
- Episode 204: LooPQR
- Episode 205: Fool on the Planet
- Episode 206: Our Running
FLCL: Alternative (Japanese Audio)
- Episode 301: Flying Memory
- Episode 302: Grown-up Wannabe
- Episode 303: Freestyle Collection
- Episode 304: Pit-a-Pat
- Episode 305: Shake It Off
- Episode 306: Full Flat
- Box featuring illustrations by Yoshiyuki Sadamoto, the character designer from the original FLCL series.
- FLCL x the pillows T-shirt
- 10 stickers
- Big-size leaflet
- A special bonus disc containing footage of the pillows performing the following songs at [[[Adult Swim On The Green|San Diego Comic-Con]] (not the full Comic-Con performance): "I think I can", "Ride on shooting star", "Spiky Seeds", "Star overhead", "ONE LIFE", "LITTLE BUSTERS", "Thank you, my twilight", and"LAST DINOSAUR"
FLCL Progressive and Alternative Blu-ray - American release